I am unable to get the restore working:
Connected to localhost, for user johninja, starting transfer...
Files transfer finished!
Permissions restored to their initial value...
Files succesfully copied to /public_html/ on localhost using FTP
Warning: fopen(/home2/johninja/public_html//configuration.php) [function.fopen]: failed to open stream: Permission denied in /home2/johninja/public_html/Joomla.Cloner.php on line 722
Unable to write to configuration file /home2/johninja/public_html//configuration.php... Aborting...
JoomlaCloner Restore Version 1.9.0
I will pay for your assistance in performing an emergency restore.
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